A combinatorial method for connecting BHV spaces representing different numbers of taxa
نویسندگان
چکیده
The phylogenetic tree space introduced by Billera, Holmes, and Vogtmann (BHV tree space) is a CAT(0) continuous space that represents trees with edge weights with an intrinsic geodesic distance measure. The geodesic distance measure unique to BHV tree space is well known to be computable in polynomial time, which makes it a potentially powerful tool for optimization problems in phylogenetics and phylogenomics. Specifically, there is significant interest in comparing and combining phylogenetic trees. For example, BHV tree space has been shown to be potentially useful in tree summary and consensus methods, which require combining trees with different number of leaves. Yet an open problem is to transition between BHV tree spaces of different maximal dimension, where each maximal dimension corresponds to the complete set of edge-weighted trees with a fixed number of leaves. We show a combinatorial method to transition between copies of BHV tree spaces in which trees with different numbers of taxa can be studied, derived from its topological structure and geometric properties. This method removes obstacles for embedding problems such as supertree and consensus methods in the BHV treespace framework.
منابع مشابه
Reasons for Creation of Important and Sacred Numbers and Their Reflections in Architectural and Urban Spaces
This research was an attempt to study reasons for creation of some of the important and sacred numbers and their reflection in architectural and urban spaces. This subject matter is important because significant and sacred numbers were used in design and construction of a number of historical spaces. The research objective was to discover some of the reasons for formation of important and sacre...
متن کاملA method for solving fully fuzzy linear system with trapezoidal fuzzy numbers
Different methods have been proposed for finding the non-negative solution of fully fuzzy linear system (FFLS) i.e. fuzzy linear system with fuzzy coefficients involving fuzzy variables. To the best of our knowledge, there is no method in the literature for finding the non-negative solution of a FFLS without any restriction on the coefficient matrix. In this paper a new computational method is ...
متن کاملChromosome Numbers for Some Erodium L'Hér (Geraniaceae) Species of Iran
Erodium (Geranaiceae) species are distributed in different habitats of Iran. Some species are of medicinal importance while some are well known weeds. There are no chromosome counts for Erdoium species of Iran. Chromosome numbers are given for six taxa of Erodium (Geraniaceae) from Iran: E. cicutarium (2n=36), E. ciconium(2n=18), E. malacoides (2n=20), E. moschatum (2n=20), E. neuradifolium (2n...
متن کاملThe Combinatorics of Finite Metric Spaces and the ( Re - ) Construction of Phylogenetic Trees
Over the last thirty years, various combinatorial aspects of finite metric spaces have been studied in the context of phylogenetic-tree reconstruction. A starting point was the following observation: Given a metric D : X × X → R representing the approximative genetic distances D(x, y), . . . between the members x, y, . . . of a finite collection X of taxa, it was shown in [15] that the followin...
متن کاملیک مدل ترکیبی برای رتبه بندی اعداد فازی غیرنرمال
Because of the suitability of fuzzy numbers in representing uncertain values , ranking the fuzzy numbers has widely applications in different sciences. Many models are presented in field of ranking the fuzzy numbers that each one rank based on special criteria and features. The purpose of this paper is presenting a new method for ranking generalized fuzzy numbers based on some parameters such...
متن کامل